{ "_id": "6ad712e6d556c3a3418a678d", "Package": "fracprolif", "Type": "Package", "Title": "Fraction Proliferation via a Quiescent Growth Model", "Version": "1.0.7", "Date": "2018-05-20", "Author": "Shawn Garbett, Darren Tyson", "Maintainer": "Shawn Garbett ", "Description": "Functions for fitting data to a quiescent growth model,\ni.e. a growth process that involves members of the population\nwho stop dividing or propagating.", "License": "GPL-2 | file LICENSE", "LazyLoad": "yes", "NeedsCompilation": "no", "Repository": "https://spgarbet.r-universe.dev", "Date/Publication": "2018-05-17 21:05:08 UTC", "RemoteUrl": "https://github.com/spgarbet/fracprolif", "RemoteRef": "HEAD", "RemoteSha": "c5eb277a7ea6587487cc48b23c5a763071b61057", "Packaged": { "Date": "2026-10-20 07:03:21 UTC", "User": "root" }, "_user": "spgarbet", "_type": "src", "_file": "fracprolif_1.0.7.tar.gz", "_fileid": "https://r2.ropensci.org/163ff6cba9a73a593d5850bfe953cb04c3050c7c41e4eace9c9e565334a45003", "_filesize": 227172, "_sha256": "163ff6cba9a73a593d5850bfe953cb04c3050c7c41e4eace9c9e565334a45003", "_expires": "2027-01-28T07:06:12.000Z", "_created": "2026-10-20T07:03:21.000Z", "_published": "2026-10-20T07:06:13.983Z", "_upstream": "https://github.com/spgarbet/fracprolif", "_status": "success", "_maintainer": { "name": "Shawn Garbett", "email": "shawn@garbett.org", "login": "spgarbet", "orcid": "0000-0003-4079-5621", "description": "Stochastic Walk of Life", "uuid": 2798 }, "_jobs": [ { "job": 118499664102, "time": 92, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12245759322" }, { "job": 118499664027, "time": 88, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12245629884" }, { "job": 118499663966, "time": 103, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "12247245462" }, { "job": 118499664081, "time": 119, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12246094740" }, { "job": 118498923383, "time": 131, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12245644590" }, { "job": 118499664057, "time": 76, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12247010371" }, { "job": 118499664133, "time": 58, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12246149327" }, { "job": 118499664047, "time": 61, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "12246746951" }, { "job": 118499664089, "time": 63, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12246623456" } ], "_buildurl": "https://github.com/r-universe/spgarbet/actions/runs/39383821784", "_commit": { "id": "c5eb277a7ea6587487cc48b23c5a763071b61057", "author": "Shawn Garbett ", "committer": "Shawn Garbett ", "message": "Minor tweaks to bring into modern CRAN compliance\n", "time": 1526591108 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "emg", "version": ">= 1.0.5", "role": "Depends" }, { "package": "numDeriv", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "stats4", "role": "Depends" } ], "_owner": "spgarbet", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "spgarbet", "count": 1, "uuid": 2798 } ], "_userbio": { "uuid": 2798, "type": "user", "name": "Shawn Garbett", "followers": 34, "description": "Stochastic Walk of Life" }, "_downloads": { "count": 310, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/fracprolif" }, "_devurl": "https://github.com/spgarbet/fracprolif", "_searchresults": 11, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/fracprolif.html", "extra/manual.pdf", "LICENSE" ], "_homeurl": "https://github.com/spgarbet/fracprolif", "_realowner": "spgarbet", "_cranurl": true, "_releases": [ { "version": "1.0.1", "date": "2012-04-24" }, { "version": "1.0.2", "date": "2012-04-27" }, { "version": "1.0.3", "date": "2012-07-12" }, { "version": "1.0.4", "date": "2012-07-20" }, { "version": "1.0.5", "date": "2012-11-08" }, { "version": "1.0.6", "date": "2015-04-27" }, { "version": "1.0.7", "date": "2018-05-17" } ], "_exports": [ ".requireCachedGenerics", "prolif_d", "prolif_fd", "prolif_fq", "prolif_q", "prolif_tot", "q.mle.emg.estimate", "q.mle.norm.estimate", "q.rates", "qsurvival.nllik", "split_d", "split_fd", "split_fq", "split_q", "split_tot" ], "_datasets": [ { "name": "ca1d.erlotinib", "title": "CA1d cells in 16 micromolar erlotinib", "object": "ca1d.erlotinib", "file": "ca1d.erlotinib.rda", "class": [ "data.frame" ], "fields": [ "Birth.frame", "Birth.ID", "End.frame", "End.ID", "End.of.Expt", "Death", "Birthtime", "Lifespan" ], "rows": 163, "table": true, "tojson": true }, { "name": "ca1d.erlotinib.totals", "title": "CA1d cell counts in various concentrations erlotinib", "object": "ca1d.erlotinib.totals", "file": "ca1d.erlotinib.totals.rda", "class": [ "data.frame" ], "fields": [ "Time_h", "e_16000", "e_4000", "e_1000", "e_250", "e_62", "e_16", "e_4", "e_1", "e__24", "DMSO" ], "rows": 73, "table": true, "tojson": true } ], "_help": [ { "page": "fracprolif-package", "title": "Fractional Proliferation.", "topics": [ "fracprolif-package", "fracprolif" ] }, { "page": "ca1d.erlotinib", "title": "CA1d cells in 16 micromolar erlotinib", "topics": [ "ca1d.erlotinib" ] }, { "page": "ca1d.erlotinib.totals", "title": "CA1d cell counts in various concentrations erlotinib", "topics": [ "ca1d.erlotinib.totals" ] }, { "page": "prolif_d", "title": "Expected Propagating Subpopulation", "topics": [ "prolif_d" ] }, { "page": "prolif_fd", "title": "Fraction of Population Propagating", "topics": [ "prolif_fd" ] }, { "page": "prolif_fq", "title": "Fraction of Population Quiescent", "topics": [ "prolif_fq" ] }, { "page": "prolif_q", "title": "Expected Quiescent Subpopulation", "topics": [ "prolif_q" ] }, { "page": "prolif_tot", "title": "Expected Proliferation Total", "topics": [ "prolif_tot" ] }, { "page": "q.mle.emg.estimate", "title": "Estimate Distribution Parameters based on EMG survival", "topics": [ "q.mle.emg.estimate" ] }, { "page": "q.mle.norm.estimate", "title": "Estimate Distribution Parameters based on EMG survival", "topics": [ "q.mle.norm.estimate" ] }, { "page": "q.rates", "title": "Estimate Quiescence-Growth Model Rates", "topics": [ "q.rates" ] }, { "page": "qrate-class", "title": "Class '\"qrate\"'", "topics": [ "qrate-class", "show,qrate-method", "summary,qrate-method" ] }, { "page": "qsurvival.nllik", "title": "Negative Log-Likelihood of a Survival Function", "topics": [ "qsurvival.nllik" ] }, { "page": "split", "title": "Piecewise curves for rates which change in the middle of an experiment", "topics": [ "split_d", "split_fd", "split_fq", "split_q", "split_tot" ] } ], "_rundeps": [ "emg", "moments", "numDeriv" ], "_score": 2.0413926851582254, "_indexed": true, "_nocasepkg": "fracprolif", "_universes": [ "spgarbet" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.7", "date": "2026-10-20T07:04:53.000Z", "distro": "resolute", "commit": "c5eb277a7ea6587487cc48b23c5a763071b61057", "fileid": "https://r2.ropensci.org/92ad20364ed54f941073f561e717edff638d0ba42848692d264f382495259103", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/spgarbet/actions/runs/39383821784" }, { "r": "4.6.1", "os": "linux", "version": "1.0.7", "date": "2026-10-20T07:04:50.000Z", "distro": "resolute", "commit": "c5eb277a7ea6587487cc48b23c5a763071b61057", "fileid": "https://r2.ropensci.org/637942591d7e169271d65a1e1a0a91133966392ee5a44dc4fb136ab7e120c056", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/spgarbet/actions/runs/39383821784" }, { "r": "4.5.3", "os": "mac", "version": "1.0.7", "date": "2026-10-20T07:05:12.000Z", "commit": "c5eb277a7ea6587487cc48b23c5a763071b61057", "fileid": "https://r2.ropensci.org/621f4a375ba9b92d3ead320843bae081a664bbc9fd37f9c4c233d4a0a79328a9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/spgarbet/actions/runs/39383821784" }, { "r": "4.6.1", "os": "mac", "version": "1.0.7", "date": "2026-10-20T07:05:25.000Z", "commit": "c5eb277a7ea6587487cc48b23c5a763071b61057", "fileid": "https://r2.ropensci.org/af946c527f5287b900f7d70da77bf26b10455ae4cc9fcedeb613bef1bd2ea5ec", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/spgarbet/actions/runs/39383821784" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.7", "date": "2026-10-20T07:04:51.000Z", "commit": "c5eb277a7ea6587487cc48b23c5a763071b61057", "fileid": "https://r2.ropensci.org/b9b8f31307b802d7ab18b9f64ba33781ad1ec7aaad15098d204b1d487be823d2", "status": "success", "buildurl": "https://github.com/r-universe/spgarbet/actions/runs/39383821784" }, { "r": "4.7.0", "os": "win", "version": "1.0.7", "date": "2026-10-20T07:04:19.000Z", "commit": "c5eb277a7ea6587487cc48b23c5a763071b61057", "fileid": "https://r2.ropensci.org/015bfbb622f138df57fbfd91f60c606be82038fc3bb204599d981b4ceb4f80b5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/spgarbet/actions/runs/39383821784" }, { "r": "4.5.3", "os": "win", "version": "1.0.7", "date": "2026-10-20T07:04:19.000Z", "commit": "c5eb277a7ea6587487cc48b23c5a763071b61057", "fileid": "https://r2.ropensci.org/445e95455cc9a217e58fb0eae2aba0ed0f9472735f24e1eb6415575ddb62f761", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/spgarbet/actions/runs/39383821784" }, { "r": "4.6.1", "os": "win", "version": "1.0.7", "date": "2026-10-20T07:04:21.000Z", "commit": "c5eb277a7ea6587487cc48b23c5a763071b61057", "fileid": "https://r2.ropensci.org/7ded8900e0a1f109fbb94727251d88b397646c10aca7f01678237e8dd32173c1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/spgarbet/actions/runs/39383821784" } ] }